Uses of Class
net.seninp.gi.logic.SameLengthMotifs

Packages that use SameLengthMotifs

Package	Description
net.seninp.gi.clusterrule

Uses of SameLengthMotifs in net.seninp.gi.clusterrule

Methods in net.seninp.gi.clusterrule that return types with arguments of type SameLengthMotifs

Modifier and Type	Method and Description
ArrayList<SameLengthMotifs>	RuleOrganizer.classifyMotifs(double lengthThreshold, GrammarRules grammarRules) Classify the motifs based on their length.
static ArrayList<SameLengthMotifs>	ClusterRuleFactory.performPruning(double[] ts, GrammarRules grammarRules, double thresholdLength, double thresholdCom, double fractionTopDist) Performs clustering.
protected ArrayList<SameLengthMotifs>	RuleOrganizer.refinePatternsByClustering(GrammarRules grammarRules, double[] ts, ArrayList<SameLengthMotifs> allClassifiedMotifs, double fractionTopDist) Refines patterns by clustering.
protected ArrayList<SameLengthMotifs>	RuleOrganizer.removeOverlappingInSimiliar(ArrayList<SameLengthMotifs> allClassifiedMotifs, GrammarRules grammarRules, double[] ts, double thresouldCom) Removes overlapping rules in similar rule set.

Method parameters in net.seninp.gi.clusterrule with type arguments of type SameLengthMotifs

Modifier and Type	Method and Description
SAXPointsNumber[]	RuleOrganizer.countPointNumberAfterRemoving(double[] ts, ArrayList<SameLengthMotifs> allClassifiedMotifs) This method counts how many times each data point is used in REDUCED sequitur rule (i.e.
static ArrayList<PackedRuleRecord>	ClusterRuleFactory.getPackedRule(ArrayList<SameLengthMotifs> newAllClassifiedMotifs) Gets packed rules set.
protected ArrayList<SameLengthMotifs>	RuleOrganizer.refinePatternsByClustering(GrammarRules grammarRules, double[] ts, ArrayList<SameLengthMotifs> allClassifiedMotifs, double fractionTopDist) Refines patterns by clustering.
protected ArrayList<SameLengthMotifs>	RuleOrganizer.removeOverlappingInSimiliar(ArrayList<SameLengthMotifs> allClassifiedMotifs, GrammarRules grammarRules, double[] ts, double thresouldCom) Removes overlapping rules in similar rule set.