A B C D E F G H I J L M N O P R S T U V

A

addIndex(int) - Method in class net.seninp.gi.sequitur.SAXRule

Adds an index of the rule occurrence.

addOccurrence(int) - Method in class net.seninp.gi.repair.RePairRule

Adds a rule occurrence.

addRule(GrammarRuleRecord) - Method in class net.seninp.gi.logic.GrammarRules

AlgoSpeedTester - Class in net.seninp.gi.tinker

AlgoSpeedTester() - Constructor for class net.seninp.gi.tinker.AlgoSpeedTester

arrRuleRecords - Static variable in class net.seninp.gi.sequitur.SAXRule

Keeper for rules references.

assignLevel() - Method in class net.seninp.gi.repair.RePairRule

assignLevel() - Method in class net.seninp.gi.sequitur.SAXRule

This traces the rule level.

B

buildGrammar(SAXRecords) - Static method in class net.seninp.gi.repair.RePairFactory

Builds a repair grammar given a set of SAX records.

buildGrammar(String) - Static method in class net.seninp.gi.repair.RePairFactory

Builds a grammar given a string of terminals delimeted by space.

buildIntervals(SAXRecords, double[], int) - Method in class net.seninp.gi.repair.RePairGrammar

Builds a table of intervals corresponding to the grammar rules.

C

calcDistTSAndPattern(double[], double[]) - Method in class net.seninp.gi.clusterrule.DistanceComputation

Calculating the distance between time series and pattern.

check() - Method in class net.seninp.gi.sequitur.SAXGuard

"Checks in" a new digram and enforce the digram uniqueness constraint.

check() - Method in class net.seninp.gi.sequitur.SAXSymbol

"Checks in" a new digram and enforce the digram uniqueness constraint.

classifyMotifs(double, GrammarRules) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

Classify the motifs based on their length.

cleanUp() - Method in class net.seninp.gi.sequitur.SAXGuard

Cleans up template.

cleanUp() - Method in class net.seninp.gi.sequitur.SAXNonTerminal

Cleans up template.

cleanUp() - Method in class net.seninp.gi.sequitur.SAXSymbol

Cleans up template.

cleanUp() - Method in class net.seninp.gi.sequitur.SAXTerminal

Cleans up template.

clone() - Method in class net.seninp.gi.logic.RuleInterval

clone() - Method in class net.seninp.gi.sequitur.SAXNonTerminal

Extra cloning method necessary so that count in the corresponding rule is increased.

ClusterRuleFactory - Class in net.seninp.gi.clusterrule

ClusterRuleFactory() - Constructor for class net.seninp.gi.clusterrule.ClusterRuleFactory

compare(SampledPoint, SampledPoint) - Method in class net.seninp.gi.rulepruner.ReducedGrammarSizeSorter

compare(SampledPoint, SampledPoint) - Method in class net.seninp.gi.rulepruner.ReductionSorter

compareTo(RuleInterval) - Method in class net.seninp.gi.logic.RuleInterval

compareTo(SAXMotif) - Method in class net.seninp.gi.logic.SAXMotif

compareTo(RepairDigramRecord) - Method in class net.seninp.gi.repair.RepairDigramRecord

A comparator built upon occurrence frequency only.

computeCover(boolean[]) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Compute the covered percentage.

computeGrammarSize(GrammarRules, Integer) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Computes the size of a normal, i.e.

containsDigram(String) - Method in class net.seninp.gi.repair.RepairPriorityQueue

Checks if a digram is in the queue.

count - Variable in class net.seninp.gi.sequitur.SAXRule

Counter keeps track of how many times the rule is used in the grammar.

countPointNumber(GrammarRules, double[]) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

This method counts how many times each data point is used in ANY sequitur rule (i.e.

countPointNumberAfterRemoving(double[], ArrayList<SameLengthMotifs>) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

This method counts how many times each data point is used in REDUCED sequitur rule (i.e.

coverage - Variable in class net.seninp.gi.logic.RuleInterval

D

decideRemove(SAXMotif, SAXMotif, SAXPointsNumber[]) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

Decide which one from overlapping subsequences should be removed.

deleteDigram() - Method in class net.seninp.gi.sequitur.SAXGuard

Removes the digram from the hash table.

deleteDigram() - Method in class net.seninp.gi.sequitur.SAXSymbol

Removes the digram from the hash table.

dequeue() - Method in class net.seninp.gi.repair.RepairPriorityQueue

Returns the most frequently seen element -- the head of the queue.

DistanceComputation - Class in net.seninp.gi.clusterrule

DistanceComputation() - Constructor for class net.seninp.gi.clusterrule.DistanceComputation

E

eculideanDistNorm(double[], double[]) - Method in class net.seninp.gi.clusterrule.DistanceComputation

Normalized Euclidean distance.

eculideanDistNormEAbandon(double[], double[], double) - Method in class net.seninp.gi.clusterrule.DistanceComputation

Normalized early abandoned Euclidean distance.

endPos - Variable in class net.seninp.gi.logic.RuleInterval

enqueue(RepairDigramRecord) - Method in class net.seninp.gi.repair.RepairPriorityQueue

Places an element in the queue at the place based on its frequency.

equals(Object) - Method in class net.seninp.gi.logic.RuleInterval

equals(Object) - Method in class net.seninp.gi.repair.RepairDigramRecord

equals(Object) - Method in class net.seninp.gi.repair.RePairGuard

equals(Object) - Method in class net.seninp.gi.repair.RePairRule

equals(Object) - Method in class net.seninp.gi.repair.RePairSymbol

equals(Object) - Method in class net.seninp.gi.rulepruner.SampledPoint

equals(Object) - Method in class net.seninp.gi.sequitur.SAXSymbol

Test if two digrams are equal.

Evaluator - Class in net.seninp.gi.tinker

Evaluator() - Constructor for class net.seninp.gi.tinker.Evaluator

EvaluatorClusterRule - Class in net.seninp.gi.tinker

EvaluatorClusterRule() - Constructor for class net.seninp.gi.tinker.EvaluatorClusterRule

EvaluatorSequiturRepair - Class in net.seninp.gi.tinker

EvaluatorSequiturRepair() - Constructor for class net.seninp.gi.tinker.EvaluatorSequiturRepair

EvaluatorTable - Class in net.seninp.gi.tinker

EvaluatorTable() - Constructor for class net.seninp.gi.tinker.EvaluatorTable

EvaluatorVideo - Class in net.seninp.gi.tinker

EvaluatorVideo() - Constructor for class net.seninp.gi.tinker.EvaluatorVideo

expand() - Method in class net.seninp.gi.sequitur.SAXNonTerminal

This symbol is the last reference to its rule.

expandedRuleString - Variable in class net.seninp.gi.repair.RePairRule

expandRules() - Method in class net.seninp.gi.repair.RePairGrammar

Global method: iterates over all rules expanding them.

F

first - Variable in class net.seninp.gi.repair.RePairRule

Both symbols, (i.e., pair).

first() - Method in class net.seninp.gi.sequitur.SAXRule

Report the FIRST symbol of the rule.

freq - Variable in class net.seninp.gi.repair.RepairDigramRecord

fromValue(int) - Static method in enum net.seninp.gi.GIAlgorithm

Parse the numerical value into an instance.

fromValue(String) - Static method in enum net.seninp.gi.GIAlgorithm

Parse the string value into an instance.

G

get(Integer) - Method in class net.seninp.gi.logic.GrammarRules

get(String) - Method in class net.seninp.gi.repair.RepairPriorityQueue

Gets an element in the queue given its key.

getAllMotifs(GrammarRules) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

Stores all the sub-sequences that generated by Sequitur rules into an array list sorted by sub-sequence length in ascending order.

getAlphabet() - Method in class net.seninp.gi.rulepruner.SampledPoint

getApproxDist() - Method in class net.seninp.gi.rulepruner.SampledPoint

getClassIndex() - Method in class net.seninp.gi.logic.PackedRuleRecord

getCompressedGrammarSize() - Method in class net.seninp.gi.rulepruner.SampledPoint

getCoverage() - Method in class net.seninp.gi.logic.Interval

getCoverage() - Method in class net.seninp.gi.logic.RuleInterval

getCoverage() - Method in class net.seninp.gi.rulepruner.SampledPoint

getCoverAsFraction(int, GrammarRules) - Static method in class net.seninp.gi.logic.GIUtils

Computes which fraction of the time series is covered by the rules set.

getCoverDelta(boolean[], GrammarRuleRecord) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Computes the delta value for the suggested rule candidate.

getDigram() - Method in class net.seninp.gi.repair.RepairDigramRecord

Get the digram string.

getEnd() - Method in class net.seninp.gi.logic.Interval

getEnd() - Method in class net.seninp.gi.logic.RuleInterval

getExpandedRuleString() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getFirst() - Method in class net.seninp.gi.repair.RePairRule

getFrequency() - Method in class net.seninp.gi.repair.RepairDigramRecord

The frequency getter.

getGrammarRules() - Method in class net.seninp.gi.rulepruner.SampledPoint

getGrammarSize() - Method in class net.seninp.gi.rulepruner.SampledPoint

getHighestFrequency() - Method in class net.seninp.gi.logic.GrammarRules

getId() - Method in class net.seninp.gi.logic.RuleInterval

getId() - Method in class net.seninp.gi.repair.RePairRule

Rule ID getter.

getIndex() - Method in class net.seninp.gi.repair.RePairSymbolRecord

An index getter, calls the payload's method for that.

getLength() - Method in class net.seninp.gi.logic.Interval

getLength() - Method in class net.seninp.gi.logic.RuleInterval

getLengths() - Method in class net.seninp.gi.repair.RePairRule

getLevel() - Method in class net.seninp.gi.repair.RePairGuard

getLevel() - Method in class net.seninp.gi.repair.RePairRule

getLevel() - Method in class net.seninp.gi.repair.RePairSymbol

This will be overridden in the non-Terminal symbol, i.e.

getLevel() - Method in class net.seninp.gi.sequitur.SAXRule

getMaxFrequency() - Method in class net.seninp.gi.rulepruner.SampledPoint

getMaxLength() - Method in class net.seninp.gi.logic.PackedRuleRecord

getMaxMotifLen() - Method in class net.seninp.gi.logic.SameLengthMotifs

getMeanLength() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getMeanRuleCoverage(int, GrammarRules) - Static method in class net.seninp.gi.logic.GIUtils

Gets the mean rule coverage.

getMinLength() - Method in class net.seninp.gi.logic.PackedRuleRecord

getMinMotifLen() - Method in class net.seninp.gi.logic.SameLengthMotifs

getNext() - Method in class net.seninp.gi.repair.RePairSymbolRecord

Next symbol getter.

getOccurrences() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getOccurrences() - Method in class net.seninp.gi.repair.RePairRule

Gets occurrences.

getPAA() - Method in class net.seninp.gi.rulepruner.SampledPoint

getPaa() - Method in class net.seninp.gi.rulepruner.SampledPoint

getPackedRule(ArrayList<SameLengthMotifs>) - Static method in class net.seninp.gi.clusterrule.ClusterRuleFactory

Gets packed rules set.

getPayload() - Method in class net.seninp.gi.repair.RePairSymbolRecord

The payload getter.

getPayload(SAXSymbol) - Static method in class net.seninp.gi.sequitur.SAXSymbol

This routine is used for the debugging.

getPeriod() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getPeriodError() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getPointIndex() - Method in class net.seninp.gi.logic.SAXPointsNumber

getPointOccurenceNumber() - Method in class net.seninp.gi.logic.SAXPointsNumber

getPointValue() - Method in class net.seninp.gi.logic.SAXPointsNumber

getPos() - Method in class net.seninp.gi.logic.SAXMotif

getPrevious() - Method in class net.seninp.gi.repair.RePairSymbolRecord

Previous symbol getter.

getPrunedRules() - Method in class net.seninp.gi.rulepruner.SampledPoint

getR0CompressedString() - Method in class net.seninp.gi.repair.RePairGrammar

getReduction() - Method in class net.seninp.gi.rulepruner.SampledPoint

getRule() - Method in class net.seninp.gi.repair.RePairGuard

getRuleIndex() - Method in class net.seninp.gi.logic.SAXMotif

getRuleIntervals() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getRuleIntervals() - Method in class net.seninp.gi.repair.RePairRule

getRuleLevel() - Method in class net.seninp.gi.logic.GrammarRuleRecord

The rule level.

getRuleName() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getRuleNumber() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getRulePositionsByRuleNum(int, SAXRule, SAXRecords, double[], int) - Static method in class net.seninp.gi.sequitur.SequiturFactory

Recovers start and stop coordinates of a rule subsequences.

getRuleRecord(Integer) - Method in class net.seninp.gi.logic.GrammarRules

getRuleRecords() - Method in class net.seninp.gi.sequitur.SAXRule

getRules() - Method in class net.seninp.gi.repair.RePairGrammar

Get all the rules as the map.

getRuleString() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getRuleUseFrequency() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getRuleYield() - Method in class net.seninp.gi.logic.GrammarRuleRecord

getSameLenMotifs() - Method in class net.seninp.gi.logic.SameLengthMotifs

getSAXRules() - Method in class net.seninp.gi.sequitur.SAXRule

Add-on to the original code by manfred and seninp.

getSecond() - Method in class net.seninp.gi.repair.RePairRule

getSimilarWith() - Method in class net.seninp.gi.logic.SAXMotif

getStart() - Method in class net.seninp.gi.logic.Interval

getStart() - Method in class net.seninp.gi.logic.RuleInterval

getStringPosition() - Method in class net.seninp.gi.repair.RePairSymbol

The position getter.

getSubsequenceNumber() - Method in class net.seninp.gi.logic.PackedRuleRecord

getWindow() - Method in class net.seninp.gi.rulepruner.SampledPoint

getZeroIntervals(int[]) - Static method in class net.seninp.gi.logic.GIUtils

Run a quick scan along the time series coverage to find a zeroed intervals.

GI_ALGORITHM_IMPLEMENTATION - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

GI_ALGORITHM_IMPLEMENTATION - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

GIAlgorithm - Enum in net.seninp.gi

GI algorithm selector.

GIUtils - Class in net.seninp.gi.logic

I use this for temporal fixtures.

GrammarRuleRecord - Class in net.seninp.gi.logic

Data container for SAX rules.

GrammarRuleRecord() - Constructor for class net.seninp.gi.logic.GrammarRuleRecord

GrammarRules - Class in net.seninp.gi.logic

Collection of rules, based on the TreeMap to guarantee the iteration order.

GrammarRules() - Constructor for class net.seninp.gi.logic.GrammarRules

GrammarStats - Class in net.seninp.gi.cli

Computes grammar stats.

GrammarStats() - Constructor for class net.seninp.gi.cli.GrammarStats

GRID_BOUNDARIES - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

H

hasEmptyRanges(boolean[]) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Searches for empty (i.e.

hashCode() - Method in class net.seninp.gi.logic.RuleInterval

hashCode() - Method in class net.seninp.gi.repair.RepairDigramRecord

hashCode() - Method in class net.seninp.gi.repair.RePairGuard

hashCode() - Method in class net.seninp.gi.repair.RePairRule

hashCode() - Method in class net.seninp.gi.repair.RePairSymbol

hashCode() - Method in class net.seninp.gi.rulepruner.SampledPoint

hashCode() - Method in class net.seninp.gi.sequitur.SAXSymbol

Custom hashcode implementation.

I

id - Variable in class net.seninp.gi.logic.RuleInterval

IN_FILE - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

IN_FILE - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

index - Variable in class net.seninp.gi.sequitur.SAXRule

Index used for printing.

indexes - Variable in class net.seninp.gi.sequitur.SAXRule

This keeps rule indexes - once rule created or used, its placement position is extracted from the TerminalSymbol position and stored here.

insertAfter(SAXSymbol) - Method in class net.seninp.gi.sequitur.SAXSymbol

Inserts a symbol after this one.

Interval - Class in net.seninp.gi.logic

Implements an interval.

Interval(int, int, double) - Constructor for class net.seninp.gi.logic.Interval

Constructor; start inclusive, end exclusive.

isClassified() - Method in class net.seninp.gi.logic.SAXMotif

isCompletlyCoveredBy(ArrayList<RuleInterval>, ArrayList<RuleInterval>) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Checks if the cover is complete.

isCovered(boolean[]) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Checks if the range is completely covered.

isCovered() - Method in class net.seninp.gi.rulepruner.SampledPoint

isEmpty - Variable in class net.seninp.gi.repair.RePairGuard

isGuard() - Method in class net.seninp.gi.repair.RePairGuard

isGuard() - Method in class net.seninp.gi.repair.RePairSymbol

This is overridden in Guard.

isGuard() - Method in class net.seninp.gi.sequitur.SAXGuard

Returns true if this is the guard symbol.

isGuard() - Method in class net.seninp.gi.sequitur.SAXSymbol

Returns true if this is the guard symbol.

isNonTerminal() - Method in class net.seninp.gi.sequitur.SAXNonTerminal

Returns true if this is a non-terminal.

isNonTerminal() - Method in class net.seninp.gi.sequitur.SAXSymbol

Returns true if this is a non-terminal.

isNullPlaceholder() - Method in class net.seninp.gi.repair.RePairGuard

iterator() - Method in class net.seninp.gi.logic.GrammarRules

J

join(SAXSymbol, SAXSymbol) - Static method in class net.seninp.gi.sequitur.SAXSymbol

Links left and right symbols together, i.e.

L

last() - Method in class net.seninp.gi.sequitur.SAXRule

Report the LAST symbol of the rule.

level - Variable in class net.seninp.gi.repair.RePairRule

level - Variable in class net.seninp.gi.sequitur.SAXRule

The rule level, used to assess the hierarchy.

M

main(String[]) - Static method in class net.seninp.gi.cli.TS2Grammar

main(String[]) - Static method in class net.seninp.gi.rulepruner.RulePrunerPrinter

Main runnable.

main(String[]) - Static method in class net.seninp.gi.tinker.AlgoSpeedTester

main(String[]) - Static method in class net.seninp.gi.tinker.Evaluator

main(String[]) - Static method in class net.seninp.gi.tinker.EvaluatorClusterRule

main(String[]) - Static method in class net.seninp.gi.tinker.EvaluatorSequiturRepair

main(String[]) - Static method in class net.seninp.gi.tinker.EvaluatorTable

main(String[]) - Static method in class net.seninp.gi.tinker.EvaluatorVideo

match(SAXSymbol, SAXSymbol) - Method in class net.seninp.gi.sequitur.SAXSymbol

Deals with a matching digram.

mean(int[]) - Static method in class net.seninp.gi.logic.GIUtils

Computes the mean value.

minMaxLengthAsString() - Method in class net.seninp.gi.logic.GrammarRuleRecord

Returns a string of min and max values.

N

n - Variable in class net.seninp.gi.sequitur.SAXSymbol

net.seninp.gi - package net.seninp.gi

Provides the code for GI algorithms: Sequitur and RePair.

net.seninp.gi.cli - package net.seninp.gi.cli

Provides CLI features.

net.seninp.gi.clusterrule - package net.seninp.gi.clusterrule

net.seninp.gi.logic - package net.seninp.gi.logic

Implements auxiliary functionality.

net.seninp.gi.repair - package net.seninp.gi.repair

Provides a sequential and parallel RePair implementations.

net.seninp.gi.rulepruner - package net.seninp.gi.rulepruner

Implements MDL-based rule pruner

net.seninp.gi.sequitur - package net.seninp.gi.sequitur

Provides a sequential Sequitur implementation.

net.seninp.gi.tinker - package net.seninp.gi.tinker

Experimental tinkering, irrelevant to the functionality...

NewRepair - Class in net.seninp.gi.repair

Improved repair implementation.

NewRepair() - Constructor for class net.seninp.gi.repair.NewRepair

numRules - Variable in class net.seninp.gi.repair.RePairGrammar

numRules - Static variable in class net.seninp.gi.sequitur.SAXRule

This is static - the global rule enumerator counter.

numTerminals - Static variable in class net.seninp.gi.sequitur.SAXSymbol

Apparently, this limits the possible number of terminals, ids of non-terminals start after this num.

O

occurrences - Variable in class net.seninp.gi.repair.RePairRule

Occurrences.

occurrencesToString() - Method in class net.seninp.gi.logic.GrammarRuleRecord

originalPosition - Variable in class net.seninp.gi.sequitur.SAXSymbol

The symbol original position.

OUT_FILE - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

OUT_FILE - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

overlaps(Interval) - Method in class net.seninp.gi.logic.Interval

True if two intervals overlap.

P

p - Variable in class net.seninp.gi.sequitur.SAXSymbol

Sort of pointers for previous and the next symbols.

PackedRuleRecord - Class in net.seninp.gi.logic

PackedRuleRecord() - Constructor for class net.seninp.gi.logic.PackedRuleRecord

parameters - Variable in class net.seninp.gi.cli.TS2GrammarParameters

parameters - Variable in class net.seninp.gi.rulepruner.RulePrunerParameters

parse(String) - Static method in class net.seninp.gi.repair.NewRepair

Parses the input string into a grammar.

peek() - Method in class net.seninp.gi.repair.RepairPriorityQueue

Peaks onto the head element (doesn't remove it).

performPruning(double[], GrammarRules, double, double, double) - Static method in class net.seninp.gi.clusterrule.ClusterRuleFactory

Performs clustering.

performPruning(double[], GrammarRules) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Performs pruning.

printRules() - Static method in class net.seninp.gi.sequitur.SAXRule

Original getRules() method.

process(GrammarRuleRecord) - Method in class net.seninp.gi.cli.GrammarStats

R

r - Variable in class net.seninp.gi.sequitur.SAXGuard

r - Variable in class net.seninp.gi.sequitur.SAXNonTerminal

r0ExpandedString - Variable in class net.seninp.gi.repair.RePairGrammar

r0String - Variable in class net.seninp.gi.repair.RePairGrammar

ReducedGrammarSizeSorter - Class in net.seninp.gi.rulepruner

Sorts sampled points according to the reduction in the Grammar size.

ReducedGrammarSizeSorter() - Constructor for class net.seninp.gi.rulepruner.ReducedGrammarSizeSorter

ReductionSorter - Class in net.seninp.gi.rulepruner

ReductionSorter() - Constructor for class net.seninp.gi.rulepruner.ReductionSorter

refinePatternsByClustering(GrammarRules, double[], ArrayList<SameLengthMotifs>, double) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

Refines patterns by clustering.

removeOverlappingInSimiliar(ArrayList<SameLengthMotifs>, GrammarRules, double[], double) - Method in class net.seninp.gi.clusterrule.RuleOrganizer

Removes overlapping rules in similar rule set.

RepairDigramRecord - Class in net.seninp.gi.repair

The RePair priority queue entry.

RepairDigramRecord(String, int) - Constructor for class net.seninp.gi.repair.RepairDigramRecord

Constructor.

RePairFactory - Class in net.seninp.gi.repair

Implements RePair.

RePairGrammar - Class in net.seninp.gi.repair

A repair grammar container.

RePairGrammar() - Constructor for class net.seninp.gi.repair.RePairGrammar

Constructor.

RePairGuard - Class in net.seninp.gi.repair

Guard holds a non-terminal symbol.

RePairGuard(RePairRule) - Constructor for class net.seninp.gi.repair.RePairGuard

Constructor.

RepairPriorityQueue - Class in net.seninp.gi.repair

Implements the priority queue for RePair.

RepairPriorityQueue() - Constructor for class net.seninp.gi.repair.RepairPriorityQueue

RePairRule - Class in net.seninp.gi.repair

The grammar rule.

RePairRule(RePairGrammar) - Constructor for class net.seninp.gi.repair.RePairRule

Constructor, assigns a rule ID using the global counter.

RePairSymbol - Class in net.seninp.gi.repair

The symbol -- which essentially is a token.

RePairSymbol() - Constructor for class net.seninp.gi.repair.RePairSymbol

Constructor.

RePairSymbol(String, int) - Constructor for class net.seninp.gi.repair.RePairSymbol

Constructor.

RePairSymbolRecord - Class in net.seninp.gi.repair

Used for keeping the track of repair symbols in the string.

RePairSymbolRecord(RePairSymbol) - Constructor for class net.seninp.gi.repair.RePairSymbolRecord

Constructor.

reset() - Static method in class net.seninp.gi.sequitur.SAXRule

Cleans up data structures.

rule - Variable in class net.seninp.gi.repair.RePairGuard

ruleIndex - Variable in class net.seninp.gi.sequitur.SAXRule

The rule's number.

RuleInterval - Class in net.seninp.gi.logic

Helper class implementing an interval used when plotting.

RuleInterval() - Constructor for class net.seninp.gi.logic.RuleInterval

RuleInterval(int, int) - Constructor for class net.seninp.gi.logic.RuleInterval

RuleInterval(int, int, int, double) - Constructor for class net.seninp.gi.logic.RuleInterval

ruleIntervals - Variable in class net.seninp.gi.repair.RePairRule

Which TS interval covered.

ruleNumber() - Method in class net.seninp.gi.logic.GrammarRuleRecord

ruleNumber - Variable in class net.seninp.gi.repair.RePairRule

The current rule number.

RuleOrganizer - Class in net.seninp.gi.clusterrule

RuleOrganizer() - Constructor for class net.seninp.gi.clusterrule.RuleOrganizer

RulePruner - Class in net.seninp.gi.rulepruner

Implements the rule pruner.

RulePruner(double[]) - Constructor for class net.seninp.gi.rulepruner.RulePruner

RulePrunerFactory - Class in net.seninp.gi.rulepruner

Pruner methods implementation.

RulePrunerFactory() - Constructor for class net.seninp.gi.rulepruner.RulePrunerFactory

RulePrunerParameters - Class in net.seninp.gi.rulepruner

Parameters accepted by the bitmap printer and their default values.

RulePrunerParameters() - Constructor for class net.seninp.gi.rulepruner.RulePrunerParameters

RulePrunerPrinter - Class in net.seninp.gi.rulepruner

Rule pruner experimentation.

RulePrunerPrinter() - Constructor for class net.seninp.gi.rulepruner.RulePrunerPrinter

runSequitur(String) - Static method in class net.seninp.gi.sequitur.SequiturFactory

Digests a string of terminals separated by a space.

S

SameLengthMotifs - Class in net.seninp.gi.logic

A data structure which is a collection of motifs.

SameLengthMotifs() - Constructor for class net.seninp.gi.logic.SameLengthMotifs

sample(int, int, int, GIAlgorithm, NumerosityReductionStrategy, double) - Method in class net.seninp.gi.rulepruner.RulePruner

Samples the specified point.

SampledPoint - Class in net.seninp.gi.rulepruner

SampledPoint() - Constructor for class net.seninp.gi.rulepruner.SampledPoint

SAX_ALPHABET_SIZE - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

SAX_NORM_THRESHOLD - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

SAX_NORM_THRESHOLD - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

SAX_NR_STRATEGY - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

SAX_NR_STRATEGY - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

SAX_PAA_SIZE - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

SAX_WINDOW_SIZE - Static variable in class net.seninp.gi.cli.TS2GrammarParameters

SAXGuard - Class in net.seninp.gi.sequitur

The Guard node - serves as head of the "doubly-linked" list representing a rule - in other words it's a rule handler.

SAXGuard(SAXRule) - Constructor for class net.seninp.gi.sequitur.SAXGuard

Constructor.

SAXMotif - Class in net.seninp.gi.logic

This is a helper data-structure which represents a single occurrence of a rule at the series.

SAXMotif() - Constructor for class net.seninp.gi.logic.SAXMotif

SAXNonTerminal - Class in net.seninp.gi.sequitur

The Non-Terminal symbol - i.e.

SAXNonTerminal(SAXRule) - Constructor for class net.seninp.gi.sequitur.SAXNonTerminal

Constructor.

SAXPointsNumber - Class in net.seninp.gi.logic

SAXPointsNumber() - Constructor for class net.seninp.gi.logic.SAXPointsNumber

SAXRule - Class in net.seninp.gi.sequitur

The Rule.

SAXRule() - Constructor for class net.seninp.gi.sequitur.SAXRule

Constructor.

SAXSymbol - Class in net.seninp.gi.sequitur

Template for Sequitur data structures.

SAXSymbol() - Constructor for class net.seninp.gi.sequitur.SAXSymbol

SAXTerminal - Class in net.seninp.gi.sequitur

This is a regular, a.k.a.

SAXTerminal(String, int) - Constructor for class net.seninp.gi.sequitur.SAXTerminal

Constructor.

second - Variable in class net.seninp.gi.repair.RePairRule

SequiturFactory - Class in net.seninp.gi.sequitur

Sort of a stand-alone factory to digesting strings with Sequitur.

series2SequiturRules(double[], int, int, int, NumerosityReductionStrategy, double) - Static method in class net.seninp.gi.sequitur.SequiturFactory

Takes a time series and returns a grammar.

setAlphabet(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setApproxDist(double) - Method in class net.seninp.gi.rulepruner.SampledPoint

setClassified(boolean) - Method in class net.seninp.gi.logic.SAXMotif

setClassIndex(int) - Method in class net.seninp.gi.logic.PackedRuleRecord

setCompressedGrammarSize(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setCoverage(double) - Method in class net.seninp.gi.logic.Interval

setCoverage(double) - Method in class net.seninp.gi.logic.RuleInterval

setCoverage(double) - Method in class net.seninp.gi.rulepruner.SampledPoint

setCovered(boolean) - Method in class net.seninp.gi.rulepruner.SampledPoint

setEnd(int) - Method in class net.seninp.gi.logic.Interval

setEnd(int) - Method in class net.seninp.gi.logic.RuleInterval

setExpandedRule(String) - Method in class net.seninp.gi.repair.RePairRule

Set the expanded rule string.

setExpandedRuleString(String) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setFirst(RePairSymbol) - Method in class net.seninp.gi.repair.RePairRule

First symbol setter.

setGrammarRules(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setGrammarSize(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setId(int) - Method in class net.seninp.gi.logic.RuleInterval

setMaxFrequency(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setMaxLength(int) - Method in class net.seninp.gi.logic.PackedRuleRecord

setMaxMotifLen(int) - Method in class net.seninp.gi.logic.SameLengthMotifs

setMeanLength(Integer) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setMinLength(int) - Method in class net.seninp.gi.logic.PackedRuleRecord

setMinMaxLength(int[]) - Method in class net.seninp.gi.logic.GrammarRuleRecord

Set min and max lengths.

setMinMotifLen(int) - Method in class net.seninp.gi.logic.SameLengthMotifs

setNext(RePairSymbolRecord) - Method in class net.seninp.gi.repair.RePairSymbolRecord

The next symbol setter.

setOccurrences(int[]) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setPAA(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setPaa(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setPeriod(double) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setPeriodError(double) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setPointIndex(int) - Method in class net.seninp.gi.logic.SAXPointsNumber

setPointOccurenceNumber(int) - Method in class net.seninp.gi.logic.SAXPointsNumber

setPointValue(double) - Method in class net.seninp.gi.logic.SAXPointsNumber

setPos(RuleInterval) - Method in class net.seninp.gi.logic.SAXMotif

setPrevious(RePairSymbolRecord) - Method in class net.seninp.gi.repair.RePairSymbolRecord

The prev symbol setter.

setPrunedRules(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

setR0ExpnadedString(String) - Method in class net.seninp.gi.repair.RePairGrammar

setR0String(String) - Method in class net.seninp.gi.repair.RePairGrammar

setReduction(double) - Method in class net.seninp.gi.rulepruner.SampledPoint

setRuleIndex(int) - Method in class net.seninp.gi.logic.SAXMotif

setRuleIntervals(ArrayList<RuleInterval>) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setRuleLevel(int) - Method in class net.seninp.gi.logic.GrammarRuleRecord

Set the rule level.

setRuleNumber(int) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setRuleString(String) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setRuleUseFrequency(int) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setRuleYield(int) - Method in class net.seninp.gi.logic.GrammarRuleRecord

setSameLenMotifs(ArrayList<SAXMotif>) - Method in class net.seninp.gi.logic.SameLengthMotifs

setSecond(RePairSymbol) - Method in class net.seninp.gi.repair.RePairRule

Second symbol setter.

setSimilarWith(SAXMotif) - Method in class net.seninp.gi.logic.SAXMotif

setStart(int) - Method in class net.seninp.gi.logic.Interval

setStart(int) - Method in class net.seninp.gi.logic.RuleInterval

setStringPosition(int) - Method in class net.seninp.gi.repair.RePairSymbol

The position setter.

setSubsequenceNumber(int) - Method in class net.seninp.gi.logic.PackedRuleRecord

setWindow(int) - Method in class net.seninp.gi.rulepruner.SampledPoint

size() - Method in class net.seninp.gi.logic.GrammarRules

size() - Method in class net.seninp.gi.repair.RepairPriorityQueue

Returns the queue size.

startPos - Variable in class net.seninp.gi.logic.RuleInterval

str - Variable in class net.seninp.gi.repair.RepairDigramRecord

SUBSAMPLING_FRACTION - Static variable in class net.seninp.gi.rulepruner.RulePrunerParameters

substitute(SAXRule) - Method in class net.seninp.gi.sequitur.SAXSymbol

Replace a digram with a non-terminal.

T

theDigrams - Static variable in class net.seninp.gi.sequitur.SAXSymbol

Hashtable to keep track of all digrams.

theGuard - Variable in class net.seninp.gi.sequitur.SAXRule

Guard symbol to mark beginning and end of rule.

theRules - Variable in class net.seninp.gi.repair.RePairGrammar

theRules - Static variable in class net.seninp.gi.sequitur.SAXRule

Yet another, global static structure allowing fast rule access.

theSubstituteTable - Static variable in class net.seninp.gi.sequitur.SAXSymbol

toAlgIndex() - Method in enum net.seninp.gi.GIAlgorithm

Get the alg index.

toExpandedRuleString() - Method in class net.seninp.gi.repair.RePairRule

Return the prefixed with R rule.

toGrammarRules() - Method in class net.seninp.gi.repair.RePairGrammar

Prints out the grammar as text.

toGrammarRulesData() - Method in class net.seninp.gi.repair.RePairGrammar

Build a grammarviz-"portable" grammar object.

toGrammarRulesData() - Method in class net.seninp.gi.sequitur.SAXRule

toInfoString() - Method in class net.seninp.gi.repair.RePairRule

toList() - Method in class net.seninp.gi.repair.RepairPriorityQueue

Needed this for debug purpose -- translates the doubly linked list into an array list.

toLogString() - Method in class net.seninp.gi.rulepruner.SampledPoint

toRuleString() - Method in class net.seninp.gi.repair.RePairRule

Return the prefixed with R rule.

toSingleLine() - Method in class net.seninp.gi.cli.GrammarStats

toString() - Method in class net.seninp.gi.cli.GrammarStats

toString() - Method in enum net.seninp.gi.GIAlgorithm

toString() - Method in class net.seninp.gi.logic.GrammarRuleRecord

toString() - Method in class net.seninp.gi.logic.GrammarRules

toString() - Method in class net.seninp.gi.logic.RuleInterval

toString() - Method in class net.seninp.gi.logic.SAXMotif

toString() - Method in class net.seninp.gi.logic.SAXPointsNumber

toString() - Method in class net.seninp.gi.repair.RepairDigramRecord

toString() - Method in class net.seninp.gi.repair.RePairGuard

toString() - Method in class net.seninp.gi.repair.RepairPriorityQueue

toString() - Method in class net.seninp.gi.repair.RePairRule

toString() - Method in class net.seninp.gi.repair.RePairSymbol

toString() - Method in class net.seninp.gi.repair.RePairSymbolRecord

toString() - Method in class net.seninp.gi.rulepruner.SampledPoint

toString() - Method in class net.seninp.gi.sequitur.SAXSymbol

toString() - Method in class net.seninp.gi.sequitur.SAXTerminal

TS2Grammar - Class in net.seninp.gi.cli

TS2Grammar() - Constructor for class net.seninp.gi.cli.TS2Grammar

TS2GrammarParameters - Class in net.seninp.gi.cli

Implements a parameters template for CLI conversion.

TS2GrammarParameters() - Constructor for class net.seninp.gi.cli.TS2GrammarParameters

U

updateDigramFrequency(String, int) - Method in class net.seninp.gi.repair.RepairPriorityQueue

Updates the priority queue according to the change...

updateRanges(boolean[], ArrayList<RuleInterval>) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Updating the coverage ranges.

updateRanges(boolean[], GrammarRules) - Static method in class net.seninp.gi.rulepruner.RulePrunerFactory

Updating the coverage ranges.

updateRuleIntervals(GrammarRules, SAXRecords, boolean, double[], int, int) - Static method in class net.seninp.gi.sequitur.SequiturFactory

USE_SLIDING_WINDOW_ACTION_KEY - Static variable in class net.seninp.gi.sequitur.SequiturFactory

Chunking/Sliding switch action key.

V

value - Variable in class net.seninp.gi.sequitur.SAXSymbol

The symbol value.

valueOf(String) - Static method in enum net.seninp.gi.GIAlgorithm

Returns the enum constant of this type with the specified name.

values() - Static method in enum net.seninp.gi.GIAlgorithm

Returns an array containing the constants of this enum type, in the order they are declared.

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