Package de.julielab.jules.ae.genemapping.resources
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Class Summary Class Description BioThesaurusIproClassMerger ContextIndexGenerator DictionaryFamilyDomainFilter Removes gene synonyms from the given dictionary that look like gene families or gene domains or are otherwise unspecific.This is yet another dictionary cleaning algorithm besiedDictionaryGeneralFilterand the DictCleaner.pl script in the update_resources_and_indices directory.DictionaryGeneralFilter Takes a gene dictionary and outputs a smaller dictionary containing only entries that do not match a set of negative patterns.GeneXMLDownloader Alternative toGeneXMLFromASN1Extractor.GeneXMLFromASN1Extractor Alternative toGeneXMLDownloader.GOExport IDReplacer This class takes as input a database or table-shaped file, a database source ID column index, an ID mapping file and an source ID mapping file column index.LinnaeusApplication NameCentricSynonymIndexGenerator Synonym or gene name centric indexer, new as of March 11, 2019.SpellCheckerIndexGenerator SynonymDisambiguationIndexGenerator SynonymIndexGenerator UniprotDictCreator UniprotFreeTextExtractor UniprotFreeTextHandler -
Enum Summary Enum Description LinnaeusApplication.Index