Package de.julielab.jules.ae.genemapping.resources

Class UniprotDictCreator

  • public class UniprotDictCreator
extends java.lang.Object
    Author:
    engelmann, faessler The UniprotDictCreator is used to retrieve relevant content for the uniprot-dictionary as found in the shell script makeGeneDictionary.sh for the creation of the resources. Note that this solution was reverse-engineered looking at the already existing uniprot.all.dict and searching for the elements in question to retrieve from uniprot.sprot.xml. A later change was made by faessler to use the primary accession ID instead of the UniProt mnemonic ID (IDs like IL2_MOUSE).

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void readEntries​(java.io.File inputFile)  
      void writeEntries​(java.io.File outputFile)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • UniprotDictCreator

        public UniprotDictCreator()

    • Method Detail

      • main

        public static void main​(java.lang.String[] args)

      • readEntries

        public void readEntries​(java.io.File inputFile)

      • writeEntries

        public void writeEntries​(java.io.File outputFile)